Southern Ocean metagenomes - SRA

SRX26478711: Southern Ocean metagenomes
1 ILLUMINA (Illumina NovaSeq 6000) run: 21,655 spots, 6.2M bases, 2.1Mb downloads

Design: Library preparation was performedusing KAPA Hyper Prep kit with PCR (Roche, Basel, Switzerland) per manufacturers recommendations. Library qualityand quantity were assessed with Qubit 2.0 DNA HS Assay (ThermoFisher, Massachusetts, USA), Tapestation HighSensitivity D1000 Assay (Agilent Technologies, California, USA), and QuantStudio 5 System (Applied Biosystems,California, USA). Illumina 8-nt dual-indices were used. Equimolar pooling of libraries was performed based on QC valuesand sequenced on an Illumina NovaSeq (Illumina, California, USA) with a read length configuration of 150 PE for [50] MPE reads ([25]M in each direction)

Submitted by: University of Pretoria

Study: Southern Ocean metagenomes

PRJNA1176684 • SRP540460 • All experiments • All runs

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metagenome reads from the Southern Ocean

Sample:

SAMN43987075 • SRS22960451 • All experiments • All runs

Organism: Pseudoalteromonas sp.

Library:

Name: IO-Ice_metabat.12

Instrument: Illumina NovaSeq 6000

Strategy: WGS